Publications#
Here is a list of publications from the laboratory, which is automatically generated from the ORCID record of Dr Bellec:
Journal articles#
Eddy Fortier, Pierre Bellec, Julie A. Boyle, and Adrian Fuente. Mri noise and auditory health: can one hundred scans be linked to hearing loss? the case of the courtois neuromod project. PLOS ONE, 2025. URL: http://dx.doi.org/10.1371/journal.pone.0309513.
Yohan Chatelain, Loïc Tetrel, Christopher J. Markiewicz, Mathias Goncalves, Gregory Kiar, Oscar Esteban, Pierre Bellec, and Tristan Glatard. A numerical variability approach to results stability tests and its application to neuroimaging. IEEE Transactions on Computers, 2025. URL: https://doi.org/10.1109/TC.2024.3475586.
Howard Chertkow, Natalie Phillips, Kenneth Rockwood, Nicole Anderson, Melissa K Andrew, Robert Bartha, Camille Beaudoin, Nathalie Bélanger, Pierre Bellec, Sylvie Belleville, Howard Bergman, Sarah Best, Jennifer Bethell, Louis Bherer, Sandra Black, Michael Borrie, Richard Camicioli, Julie Carrier, Neil Cashman, Senny Chan, Lynden Crowshoe, Claudio Cuello, Max Cynader, Thanh Dang-Vu, Samir Das, Roger A Dixon, Simon Ducharme, Gillian Einstein, Alan C Evans, Margaret Fahnestock, Howard Feldman, Guylaine Ferland, Elizabeth Finger, John D Fisk, Jennifer Fogarty, Edward Fon, Ziv Gan-Or, Serge Gauthier, Carol Greenwood, Charlie Henri-Bellemare, Nathan Herrmann, David B Hogan, Robin Hsiung, Inbal Itzhak, Kristen Jacklin, Krista Lanctôt, Andrew Lim, Ian MacKenzie, Mario Masellis, Colleen Maxwell, and Carrie McAiney. Impact of a national dementia research consortium: the canadian consortium on neurodegeneration in aging (ccna). Journal of Alzheimer’s Disease, 2024. URL: http://dx.doi.org/10.1177/13872877241290990.
Yu Zhang, Lingzhong Fan, Yongfu Hao, Alain Dagher, Tianzi Jiang, and Pierre Bellec. Connectome-constrained neural decoding reveals a representational hierarchy from perception to cognition to action. Science Bulletin, 2024. URL: http://dx.doi.org/10.1016/j.scib.2024.08.029.
Annabelle Harvey, Clara A. Moreau, Kuldeep Kumar, Guillaume Huguet, Sebastian G.W. Urchs, Hanad Sharmarke, Khadije Jizi, Charles-Olivier Martin, Nadine Younis, Petra Tamer, Jean-Louis Martineau, Pierre Orban, Ana Isabel Silva, Jeremy Hall, Marianne B.M. van den Bree, Michael J. Owen, David E.J. Linden, Sarah Lippé, Carrie E. Bearden, Guillaume Dumas, Sébastien Jacquemont, and Pierre Bellec. Challenges in multi-task learning for fmri-based diagnosis: benefits for psychiatric conditions and cnvs would likely require thousands of patients. Imaging Neuroscience, 2024. URL: http://dx.doi.org/10.1162/imag_a_00222.
François Paugam, Basile Pinsard, Guillaume Lajoie, and Pierre Bellec. A benchmark of individual auto-regressive models in a massive fmri dataset. Imaging Neuroscience, 2024. URL: http://dx.doi.org/10.1162/imag_a_00228.
Hao-Ting Wang, Natasha Clarke, Quentin Dessain, François Paugam, and Pierre Bellec. Nilearn and big data facilitates transdiagnostic brain biomarkers. Biological Psychiatry, 2024. URL: http://dx.doi.org/10.1016/j.biopsych.2024.02.057.
Hao-Ting Wang, Steven L. Meisler, Hanad Sharmarke, Natasha Clarke, Nicolas Gensollen, Christopher J. Markiewicz, François Paugam, Bertrand Thirion, and Pierre Bellec. Continuous evaluation of denoising strategies in resting-state fmri connectivity using fmriprep and nilearn. PLOS Computational Biology, 2024. URL: http://dx.doi.org/10.1371/journal.pcbi.1011942.
E. B. Barbeau, A. Badhwar, S. Kousaie, P. Bellec, M. Descoteaux, D. Klein, and M. Petrides. Dissection of the temporofrontal extreme capsule fasciculus using diffusion mri tractography and association with lexical retrieval. eneuro, 2024. URL: http://dx.doi.org/10.1523/eneuro.0363-23.2023.
Yann Harel, André Cyr, Julie Boyle, Basile Pinsard, Jeremy Bernard, Marie-France Fourcade, Himanshu Aggarwal, Ana Fernanda Ponce, Bertrand Thirion, Karim Jerbi, and Pierre Bellec. Open design of a reproducible videogame controller for mri and meg. PLOS ONE, 2023. URL: http://dx.doi.org/10.1371/journal.pone.0290158.
Shima Rastegarnia, Marie St-Laurent, Elizabeth DuPre, Basile Pinsard, and Pierre Bellec. Brain decoding of the human connectome project tasks in a dense individual fmri dataset. NeuroImage, 2023. URL: https://doi.org/10.1016/j.neuroimage.2023.120395.
Rachel J. Harding, Patrick Bermudez, Alexander Bernier, Michael J. S. Beauvais, Pierre Bellec, Sean L. Hill, Agâh Karakuzu, Bartha M. Knoppers, Paul Pavlidis, Jean-Baptiste Poline, Jane Roskams, Nikola Stikov, Jessica Stone, Stephen Strother, CONP Consortium, and alan evans. The canadian open neuroscience platform—an open science framework for the neuroscience community. PLOS Computational Biology, 2023. URL: http://dx.doi.org/10.1371/journal.pcbi.1011230.
Clara A MOREAU, Kuldeep Kumar, Annabelle Harvey, Guillaume Huguet, Sebastian G W Urchs, Laura M Schultz, Hanad Sharmarke, Khadije Jizi, Charles-Olivier Martin, Nadine Younis, Petra Tamer, Jean-Louis Martineau, Pierre Orban, Ana Isabel Silva, Jeremy Hall, Marianne B M van den Bree, Michael J Owen, David E J Linden, Sarah Lippé, Carrie Bearden, Laura Almasy, David C Glahn, Paul M Thompson, Thomas Bourgeron, Pierre Bellec, and Sebastien Jacquemont. Brain functional connectivity mirrors genetic pleiotropy in psychiatric conditions. Brain, 2023. URL: http://dx.doi.org/10.1093/brain/awac315.
Valentina Borghesani, J. Armoza, Martin Hebart, P. Bellec, and S. M. Brambati. The three terms task - an open benchmark to compare human and artificial semantic representations. Scientific Data, 2023. URL: http://dx.doi.org/10.1038/s41597-023-02015-3.
Clara A MOREAU, Annabelle Harvey, Kuldeep Kumar, Guillaume Huguet, Sebastian G.W. Urchs, Elise A. Douard, Laura Schultz, Hanad Sharmarke, Khadije Jizi, Charles-Olivier Martin, Nadine Younis, Petra Tamer, Thomas Rolland, Jean-Louis Martineau, Pierre Orban, Ana I Silva, Jeremy Hall, Marianne B.M. van den Bree, Michael J. Owen, David E.J. Linden, Aurelie Labbe, Sarah Lippé, Carrie E. Bearden, Laura Almasy, David C. Glahn, Paul M. Thompson, Thomas Bourgeron, Pierre Bellec, and Sebastien Jacquemont. Genetic heterogeneity shapes brain connectivity in psychiatry. Biological Psychiatry, 2023. URL: http://dx.doi.org/10.1016/j.biopsych.2022.08.024.
Sebastian Urchs, Angela Tam, Pierre Orban, Clara Moreau, Yassine Benhajali, Hien Nguyen, Alan C Evans, and Pierre Bellec. Functional connectivity subtypes associate robustly with asd diagnosis. eLife, 2022. URL: http://dx.doi.org/10.7554/elife.56257.
Bruno Hebling Vieira, Franziskus Liem, Kamalaker Dadi, Denis A. Engemann, Alexandre Gramfort, Pierre Bellec, Richard Cameron Craddock, Jessica S. Damoiseaux, Christopher J. Steele, Tal Yarkoni, Nicolas Langer, Daniel S. Margulies, and Gaël Varoquaux. Predicting future cognitive decline from non-brain and multimodal brain imaging data in healthy and pathological aging. Neurobiology of Aging, 2022. URL: http://dx.doi.org/10.1016/j.neurobiolaging.2022.06.008.
Yu Zhang, Nicolas FARRUGIA, and Pierre Bellec. Deep learning models of cognitive processes constrained by human brain connectomes. Medical Image Analysis, 2022. URL: http://dx.doi.org/10.1016/j.media.2022.102507.
Shannon M. Drouin, for the Alzheimer’s Disease Neuroimaging Initiative, G. Peggy McFall, Olivier Potvin, Pierre Bellec, Mario Masellis, Simon Duchesne, and Roger A. Dixon. Data-driven analyses of longitudinal hippocampal imaging trajectories: discrimination and biomarker prediction of change classes. Journal of Alzheimer's Disease, 2022. URL: http://dx.doi.org/10.3233/jad-215289.
Elizabeth DuPre, Feilim Mac Gabhann, Chris Holdgraf, Agah Karakuzu, Loïc Tetrel, Pierre Bellec, Nikola Stikov, and Jean-Baptiste Poline. Beyond advertising: new infrastructures for publishing integrated research objects. PLOS Computational Biology, 2022. URL: https://doi.org/10.1371/journal.pcbi.1009651.
Clara A MOREAU, Armin Raznahan, Pierre Bellec, Mallar Chakravarty, Paul M Thompson, and Sebastien Jacquemont. Dissecting autism and schizophrenia through neuroimaging genomics. Brain, 2021. URL: http://dx.doi.org/10.1093/brain/awab096.
Jennifer Tremblay-Mercier, Cécile Madjar, Samir Das, Alexa Pichet Binette, Stephanie O.M. Dyke, Pierre Étienne, Marie-Elyse Lafaille-Magnan, Jordana Remz, Pierre Bellec, D. Louis Collins, M. Natasha Rajah, Veronique Bohbot, Jeannie-Marie Leoutsakos, Yasser Iturria-Medina, Justin Kat, Richard D. Hoge, Serge Gauthier, Christine L. Tardif, M. Mallar Chakravarty, Jean-Baptiste Poline, Pedro Rosa-Neto, Alan C. Evans, Sylvia Villeneuve, Judes Poirier, and John C.S. Breitner. Open science datasets from prevent-ad, a longitudinal cohort of pre-symptomatic alzheimer’s disease. NeuroImage: Clinical, 2021. URL: http://dx.doi.org/10.1016/j.nicl.2021.102733.
Rémi Gau, Stephanie Noble, Katja Heuer, Katherine L. Bottenhorn, Isil P. Bilgin, Yu-Fang Yang, Julia M. Huntenburg, Johanna M.M. Bayer, Richard A.I. Bethlehem, Shawn A. Rhoads, Christoph Vogelbacher, Valentina Borghesani, Elizabeth Levitis, Hao-Ting Wang, Sofie Van Den Bossche, Xenia Kobeleva, Jon Haitz Legarreta, Samuel Guay, Selim Melvin Atay, Gael P. Varoquaux, Dorien C. Huijser, Malin S. Sandström, Peer Herholz, Samuel A. Nastase, AmanPreet Badhwar, Guillaume Dumas, Simon Schwab, Stefano Moia, Michael Dayan, Yasmine Bassil, Paula P. Brooks, Matteo Mancini, James M. Shine, David O’Connor, Xihe Xie, Davide Poggiali, Patrick Friedrich, Anibal S. Heinsfeld, Lydia Riedl, Roberto Toro, César Caballero-Gaudes, Anders Eklund, Kelly G. Garner, Christopher R. Nolan, Damion V. Demeter, Fernando A. Barrios, Junaid S. Merchant, Elizabeth A. McDevitt, Robert Oostenveld, R. Cameron Craddock, and Ariel Rokem. Brainhack: developing a culture of open, inclusive, community-driven neuroscience. Neuron, 2021. URL: http://dx.doi.org/10.1016/j.neuron.2021.04.001.
Yu Zhang, Loïc Tetrel, Bertrand Thirion, and Pierre Bellec. Functional annotation of human cognitive states using deep graph convolution. NeuroImage, 2021. URL: https://doi.org/10.1016/j.neuroimage.2021.117847.
Véronique Daneault, Pierre Orban, Nicolas Martin, Christian Dansereau, Jonathan Godbout, Philippe Pouliot, Philip Dickinson, Nadia Gosselin, Gilles Vandewalle, Pierre Maquet, Jean-Marc Lina, Julien Doyon, Pierre Bellec, and Julie Carrier. Cerebral functional networks during sleep in young and older individuals. Scientific Reports, 2021. URL: http://dx.doi.org/10.1038/s41598-021-84417-0.
Mathieu Boudreau, Jean-Baptiste Poline, Pierre Bellec, and Nikola Stikov. On the open-source landscape of plos computational biology. PLOS Computational Biology, 2021. URL: http://dx.doi.org/10.1371/journal.pcbi.1008725.
Amal, Yu Zhang, Max Mignotte, and Pierre Bellec. Unraveling reproducible dynamic states of individual brain functional parcellation. Network Neuroscience, 2021. URL: http://dx.doi.org/10.1162/netn_a_00168.
Perrine Ferré, Julien Jarret, Simona Brambati, Pierre Bellec, and Yves Joanette. Functional connectivity of successful picture-naming: age-specific organization and the effect of engaging in stimulating activities. Frontiers in Aging Neuroscience, 2020. URL: http://dx.doi.org/10.3389/fnagi.2020.535770.
Clara A MOREAU, Sebastian Urchs, Kuldeep Kumar, Pierre Orban, Catherine Schramm, Guillaume Dumas, Aurélie Labbe, Guillaume Huguet, Douard Elise, Pierre-Olivier Quirion, Amy Lin, Leila Kushan, Stephanie Grot, David Luck, Adrianna Mendrek, Stephane Potvin, Emmanuel Stip, Thomas Bourgeron, Alan C. Evans, Carrie Bearden, Pierre Bellec, and Sebastien Jacquemont. Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia. Nature Communications, 2020. URL: http://dx.doi.org/10.1038/s41467-020-18997-2.
AmanPreet Badhwar, Yannik Collin-Verreault, Desiree Lussier, Hanad Sharmarke, Pierre Orban, Sebastian Urchs, Isabelle Chouinard, Jacob Vogel, Olivier Potvin, Simon Duchesne, and Pierre Bellec. A dataset of long-term consistency values of resting-state fmri connectivity maps in a single individual derived at multiple sites and vendors using the canadian dementia imaging protocol. Data in Brief, 2020. URL: http://dx.doi.org/10.1016/j.dib.2020.105699.
Perrine Ferré, Julien Jarret, Simona Maria Brambati, Pierre Bellec, and Yves Joanette. Task-induced functional connectivity of picture naming in healthy aging: the impacts of age and task complexity. Neurobiology of Language, 2020. URL: https://doi.org/10.1162/nol_a_00007.
AmanPreet Badhwar, G Peggy McFall, Shraddha Sapkota, Sandra E Black, Howard Chertkow, Simon Duchesne, Mario Masellis, Liang Li, Roger A Dixon, and Pierre Bellec. A multiomics approach to heterogeneity in alzheimer’s disease: focused review and roadmap. Brain, 2020. URL: http://dx.doi.org/10.1093/brain/awz384.
Aki Nikolaidis, Anibal Solon Heinsfeld, Ting Xu, Pierre Bellec, Joshua Vogelstein, and Michael Milham. Bagging improves reproducibility of functional parcellation of the human brain. NeuroImage, 2020. URL: http://dx.doi.org/10.1016/j.neuroimage.2020.116678.
AmanPreet Badhwar, Yannik Collin-Verreault, Pierre Orban, Sebastian Urchs, Isabelle Chouinard, Jacob Vogel, Olivier Potvin, Simon Duchesne, and Pierre Bellec. Multivariate consistency of resting-state fmri connectivity maps acquired on a single individual over 2.5 years, 13 sites and 3 vendors. NeuroImage, 2020. URL: http://dx.doi.org/10.1016/j.neuroimage.2019.116210.
for the Alzheimer’s Disease Neuroimaging Initiative, Joseph Therriault, S. Wang, S. Mathotaarachchi, Tharick A. Pascoal, M. Parent, T. Beaudry, M. Shin, Benedet AL, M. S. Kang, K. P. Ng, C. Dansereau, M. T. M. Park, V. Fonov, F. Carbonell, E. Zimmer, M. Mallar Chakravarty, P. Bellec, S. Gauthier, and P. Rosa-Neto. Rostral-caudal hippocampal functional convergence is reduced across the alzheimer’s disease spectrum. Molecular Neurobiology, 2019. URL: http://dx.doi.org/10.1007/s12035-019-01671-0.
Sylvie Belleville, Andréa C. LeBlanc, Marie‐Jeanne Kergoat, Frédéric Calon, Pierrette Gaudreau, Sébastien S. Hébert, Carol Hudon, Nicole Leclerc, Naguib Mechawar, Simon Duchesne, Serge Gauthier, Consortium for the Early Identification of Alzheimer's disease‐Quebec (CIMA‐Q), Pierre Bellec, Sylvie Belleville, Christian Bocti, Frédéric Calon, Howard Chertkow, Louis Collins, Stephen Cunnane, Simon Duchesne, Pierrette Gaudreau, Serge Gauthier, Sébastien S. Hébert, Carol Hudon Marie‐Jeanne‐Kergoat, Andréa C. LeBlanc, Nicole Leclerc, Naguib Mechawar, Natalie Philips, Jean‐Paul Soucy, Thien Thanh Dang Vu, Louis Verret, and Juan Manuel Villalpando. The consortium for the early identification of alzheimer's disease–quebec (cima‐q). Alzheimer's Dement (Amst.), 2019. URL: http://dx.doi.org/10.1016/j.dadm.2019.07.003.
Simon Duchesne, Louis Dieumegarde, Isabelle Chouinard, Farnaz Farokhian, Amanpreet Badhwar, Pierre Bellec, Pascal Tétreault, Maxime Descoteaux, Arnaud Boré, Jean-Christophe Houde, Christian Beaulieu, and Olivier Potvin. Structural and functional multi-platform mri series of a single human volunteer over more than fifteen years. Scientific Data, 2019. URL: http://dx.doi.org/10.1038/s41597-019-0262-8.
Perrine Ferré, Yassine Benhajali, Jason Steffener, Yaakov Stern, Yves Joanette, and Pierre Bellec. Resting-state and vocabulary tasks distinctively inform on age-related differences in the functional brain connectome. Language, Cognition and Neuroscience, 2019. URL: http://dx.doi.org/10.1080/23273798.2019.1608072.
Olivier Potvin, April Khademi, Isabelle Chouinard, Farnaz Farokhian, Louis Dieumegarde, Ilana Leppert, Rick Hoge, Maria Natasha Rajah, Pierre Bellec, Simon Duchesne, the CIMA-Q group, and the CCNA group. Measurement variability following mri system upgrade. Frontiers in Neurology, 2019. URL: http://dx.doi.org/10.3389/fneur.2019.00726.
Olivier Potvin, Isabelle Chouinard, Louis Dieumegarde, Robert Bartha, Pierre Bellec, D. Louis Collins, Maxime Descoteaux, Rick Hoge, Joel Ramirez, Christopher J.M. Scott, Eric E. Smith, Stephen C. Strother, Sandra E. Black, and Simon Duchesne. The canadian dementia imaging protocol: harmonization validity for morphometry measurements. NeuroImage: Clinical, 2019. URL: https://doi.org/10.1016/j.nicl.2019.101943.
Angela Tam, Christian Dansereau, Yasser Iturria-Medina, Sebastian Urchs, Pierre Orban, Hanad Sharmarke, John Breitner, and Pierre Bellec. A highly predictive signature of cognition and brain atrophy for progression to alzheimer's dementia. GigaScience, 2019. URL: https://doi.org/10.1093/gigascience/giz055.
Jan R. Wessel, Krzysztof J. Gorgolewski, and Pierre Bellec. Switching software in science: motivations, challenges, and solutions. Trends in Cognitive Sciences, 2019. URL: http://dx.doi.org/10.1016/j.tics.2019.01.004.
Atsuko Nagano-Saito, Pierre Bellec, Alexandru Hanganu, Stevan Jobert, Béatriz Mejia-Constain, Clotilde Degroot, Anne-Louise Lafontaine, Jennifer I. Lissemore, Kelly Smart, Chawki Benkelfat, and Oury Monchi. Why is aging a risk factor for cognitive impairment in parkinson's disease?—a resting state fmri study. Frontiers in Neurology, 2019. URL: http://dx.doi.org/10.3389/fneur.2019.00267.
Sebastian Urchs, Jonathan Armoza, Clara Moreau, Yassine Benhajali, Jolène St-Aubin, Pierre Orban, and Pierre Bellec. Mist: a multi-resolution parcellation of functional brain networks. MNI Open Research, 2019. URL: http://dx.doi.org/10.12688/mniopenres.12767.2.
Yang Ding, Sabrina Suffren, Pierre Bellec, and Gregory A. Lodygensky. Supervised machine learning quality control for magnetic resonance artifacts in neonatal data sets. Human Brain Mapping, 2019. URL: http://dx.doi.org/10.1002/hbm.24449.
Jacob Vogel, Niklas Mattsson, Yasser Iturria‐Medina, Olof T. Strandberg, Michael Schöll, Christian Dansereau, Sylvia Villeneuve, Wiesje M. van der Flier, Philip Scheltens, Pierre Bellec, Alan C. Evans, Oskar Hansson, Rik Ossenkoppele, The Alzheimer's Disease Neuroimaging Initiative, and The Swedish BioFINDER Study. Data‐driven approaches for tau‐pet imaging biomarkers in alzheimer's disease. Human Brain Mapping, 2019. URL: http://dx.doi.org/10.1002/hbm.24401.
Simon Duchesne, Isabelle Chouinard, Olivier Potvin, Vladimir S. Fonov, April Khademi, Robert Bartha, Pierre Bellec, D. Louis Collins, Maxime Descoteaux, Rick Hoge, Cheryl R. McCreary, Joel Ramirez, Christopher J.M. Scott, Eric E. Smith, Stephen C. Strother, Sandra E. Black, for the CIMA‐Q group, and the CCNA group. The canadian dementia imaging protocol: harmonizing national cohorts. Journal of Magnetic Resonance Imaging, 2019. URL: http://dx.doi.org/10.1002/jmri.26197.
Jacob W Vogel, Etienne Vachon-Presseau, Alexa Pichet Binette, Angela Tam, Pierre Orban, Renaud La Joie, Mélissa Savard, Cynthia Picard, Judes Poirier, Pierre Bellec, John C S Breitner, and Sylvia Villeneuve. Brain properties predict proximity to symptom onset in sporadic alzheimer’s disease. Brain, 2018. URL: http://dx.doi.org/10.1093/brain/awy093.
Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Pierre Bellec, Rémi Bernard, Axel Bonnet, Shawn T Brown, Sorina Camarasu-Pop, Frédéric Cervenansky, Samir Das, Rafael Ferreira da Silva, Guillaume Flandin, Pascal Girard, Krzysztof J Gorgolewski, Charles R G Guttmann, Valérie Hayot-Sasson, Pierre-Olivier Quirion, Pierre Rioux, Marc-Étienne Rousseau, and Alan C Evans. Boutiques: a flexible framework to integrate command-line applications in computing platforms. GigaScience, 2018. URL: http://dx.doi.org/10.1093/gigascience/giy016.
Sander C.J. Verfaillie, Alexa Pichet Binette, Etienne Vachon-Presseau, Shirin Tabrizi, Mélissa Savard, Pierre Bellec, Rik Ossenkoppele, Philip Scheltens, Wiesje M. van der Flier, John C.S. Breitner, Sylvia Villeneuve, Paul Aisen, Elena Anthal, Melissa Appleby, Gülebru Ayranci, Alan Barkun, Thomas Beaudry, Pierre Bellec, Fatiha Benbouhoud, Veronique Bohbot, Jason Brandt, John Breitner, Leopoldina Carmo, Edouard Carrier Charles, Mallar Chakravarty, Laksanun Cheewakriengkrai, Louis Collins, Blandine Courcot, Doris Couture, Suzanne Craft, Claudio Cuello, Mahsa Dadar, Christian Dansereau, DasSamir, Dauar-Tedeschi Marina, Doris Dea, Clement Debacker, Rene Desautels, Sylvie Dubuc, Guerda Duclair, Marianne Dufour, Mark Eisenberg, Rana El-Khoury, Pierre Etienne, Alan Evans, Anne-Marie Faubert, Fabiola Ferdinand, Vladimir Fonov, David Fontaine, Josée Frappier, and Frenette Joanne. Subjective cognitive decline is associated with altered default mode network connectivity in individuals with a family history of alzheimer’s disease. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 2018. URL: http://dx.doi.org/10.1016/j.bpsc.2017.11.012.
Manuel Garcia-Garcia, Aki Nikolaidis, Pierre Bellec, R. Cameron Craddock, Brian Cheung, Francisco X. Castellanos, and Michael P. Milham. Detecting stable individual differences in the functional organization of the human basal ganglia. NeuroImage, 2018. URL: http://dx.doi.org/10.1016/j.neuroimage.2017.07.029.
R. Cameron Craddock, Pierre Bellec, and Saad Jbabdi. Neuroimage special issue on brain segmentation and parcellation - editorial. NeuroImage, 2018. URL: http://dx.doi.org/10.1016/j.neuroimage.2017.11.063.
Gabriel Mangeat, Atef Badji, Russell Ouellette, Constantina A. Treaba, Elena Herranz, Tobias Granberg, Céline Louapre, Nikola Stikov, Jacob A. Sloane, Pierre Bellec, Caterina Mainero, and Julien Cohen‐Adad. Changes in structural network are associated with cortical demyelination in early multiple sclerosis. Human Brain Mapping, 2018. URL: http://dx.doi.org/10.1002/hbm.23993.
Pierre Orban, Christian Dansereau, Laurence Desbois, Violaine Mongeau-Pérusse, Charles-Édouard Giguère, Hien Nguyen, Adrianna Mendrek, Emmanuel Stip, and Pierre Bellec. Multisite generalizability of schizophrenia diagnosis classification based on functional brain connectivity. Schizophrenia Research, 2018. URL: http://dx.doi.org/10.1016/j.schres.2017.05.027.
Tristan Glatard, Marc-Étienne Rousseau, Sorina Camarasu-Pop, Reza Adalat, Natacha Beck, Samir Das, Rafael Ferreira da Silva, Najmeh Khalili-Mahani, Vladimir Korkhov, Pierre-Olivier Quirion, Pierre Rioux, Sílvia D. Olabarriaga, Pierre Bellec, and Alan C. Evans. Software architectures to integrate workflow engines in science gateways. Future Generation Computer Systems, 2017. URL: http://dx.doi.org/10.1016/j.future.2017.01.005.
AmanPreet Badhwar, Angela Tam, Christian Dansereau, Pierre Orban, Felix Hoffstaedter, and Pierre Bellec. Resting‐state network dysfunction in alzheimer's disease: a systematic review and meta‐analysis. Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 2017. URL: http://dx.doi.org/10.1016/j.dadm.2017.03.007.
Hien D. Nguyen, Geoffrey J. McLachlan, Pierre Orban, Pierre Bellec, and Andrew L. Janke. Maximum pseudolikelihood estimation for model-based clustering of time series data. Neural Computation, 2017. URL: http://dx.doi.org/10.1162/neco_a_00938.
Christian Dansereau, Yassine Benhajali, Celine Risterucci, Emilio Merlo Pich, Pierre Orban, Douglas Arnold, and Pierre Bellec. Statistical power and prediction accuracy in multisite resting-state fmri connectivity. NeuroImage, 2017. URL: http://dx.doi.org/10.1016/j.neuroimage.2017.01.072.
Krzysztof J. Gorgolewski, Dina Schneidman, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M. Mallar Chakravarty, Nathan W. Churchill, Alexander Li Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S. Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J. Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, and Russell A. Poldrack. Bids apps: improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLOS Computational Biology, 2017. URL: https://doi.org/10.1371/journal.pcbi.1005209.
Maxime Pelland, Pierre Orban, Christian Dansereau, Franco Lepore, Pierre Bellec, and Olivier Collignon. State-dependent modulation of functional connectivity in early blind individuals. NeuroImage, 2017. URL: http://dx.doi.org/10.1016/j.neuroimage.2016.12.053.
Pierre Orban, Martin Desseilles, Adrianna Mendrek, Josiane Bourque, Pierre Bellec, and Emmanuel Stip. Altered brain connectivity in patients with schizophrenia is consistent across cognitive contexts. Journal of Psychiatry & Neuroscience, 2017. URL: http://dx.doi.org/10.1503/jpn.150247.
Pierre Bellec, Carlton Chu, François Chouinard-Decorte, Yassine Benhajali, Daniel S. Margulies, and R. Cameron Craddock. The neuro bureau adhd-200 preprocessed repository. NeuroImage, 2017. URL: http://dx.doi.org/10.1016/j.neuroimage.2016.06.034.
Isabelle Lajoie, Scott Nugent, Clément Debacker, Kenneth Dyson, Felipe B. Tancredi, AmanPreet Badhwar, Sylvie Belleville, Yan Deschaintre, Pierre Bellec, Julien Doyon, Christian Bocti, Serge Gauthier, Douglas Arnold, Marie-Jeanne Kergoat, Howard Chertkow, Oury Monchi, and Richard D. Hoge. Application of calibrated fmri in alzheimer's disease. NeuroImage: Clinical, 2017. URL: http://dx.doi.org/10.1016/j.nicl.2017.05.009.
A.T. Reid, J. Lewis, G. Bezgin, B. Khundrakpam, S.B. Eickhoff, A.R. McIntosh, P. Bellec, and A.C. Evans. A cross-modal, cross-species comparison of connectivity measures in the primate brain. NeuroImage, 2016. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84945545942&partnerID=MN8TOARS.
O. Monchi, A. Hanganu, and P. Bellec. Markers of cognitive decline in pd: the case for heterogeneity. Parkinsonism and Related Disorders, 2016. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84959018380&partnerID=MN8TOARS.
E. Jakobsen, J. Böttger, P. Bellec, S. Geyer, R. Rübsamen, M. Petrides, and D.S. Margulies. Subdivision of broca's region based on individual-level functional connectivity. European Journal of Neuroscience, 2016. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84958613638&partnerID=MN8TOARS.
G. Marrelec, A. Messé, and P. Bellec. A bayesian alternative to mutual information for the hierarchical clustering of dependent random variables. PLoS ONE, 2015. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84947778845&partnerID=MN8TOARS.
A. Tam, C. Dansereau, A. Badhwar, P. Orban, S. Belleville, H. Chertkow, A. Dagher, A. Hanganu, O. Monchi, P. Rosa-Neto, A. Shmuel, S. Wang, J. Breitner, and P. Bellec. Common effects of amnestic mild cognitive impairmenton resting-state connectivity across four independent studies. Frontiers in Aging Neuroscience, 2015. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84976875047&partnerID=MN8TOARS.
P. Bellec, Y. Benhajali, F. Carbonell, C. Dansereau, G. Albouy, M. Pelland, C. Craddock, O. Collignon, J. Doyon, E. Stip, and P. Orban. Impact of the resolution of brain parcels on connectome-wide association studies in fmri. NeuroImage, 2015. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84945479546&partnerID=MN8TOARS.
P. Orban, C. Madjar, M. Savard, C. Dansereau, A. Tam, S. Das, A.C. Evans, P. Rosa-Neto, J.C.S. Breitner, P. Bellec, P. Aisen, T.A. Pascoal, E. Anthal, M. Appleby, A. Barkun, T. Beaudry, F. Benbouhoud, V. Bohbot, J. Brandt, C. Brunelle, L. Carmo, L. Cheewakriengkrai, L. Collins, B. Courcot, D. Couture, S. Craft, A.C. Cuello, M. Dadar, M. Dauar-Tedeschi, D. Dea, C. Debacker, R. Desautels, N. Desrochers, S. Dubuc, G. Duclair, M. Dufour, M. Eisenberg, R. El-Khoury, P. Etienne, A.M. Faubert, F. Ferdinand, V.S. Fonov, D. Fontaine, R. Francoeur, J. Frappier, J. Frenette, S. Gauthier, V. Gervais, R. Giles, R. Gordon, R. Hoge, B.T. Hyman, Y. Iturria-Medina, C.R. Jack, J. Kat, Z.S. Khachaturian, S. Kliegman, D.S. Knopman, P. Kostopoulos, A. Labonté, M.-E. Lafaille-Magnan, T. Lee, C. Lepage, I. Leppert, J.-M. Leoutsakos, L. Mahar, J.-R. Maltais, A. Mathieu, S. Mathotaarachchi, G. Maultaup, G. Mayrand, D. Michaud, J. Miron, T.J. Montine, J.C. Morris, L.-M. Münter, V. Nair, J. Near, H. Newbold-Fox, V. Pagé, M. Petkova, C. Picard, G. Pogossova, I. Poirier, J. Poirier, J. Pruessner, N. Rajah, P. Rioux, M.A. Sager, R.A. Sperling, P.N. Tariot, E. Teigner, L. Théroux, R.G. Thomas, P.-J. Toussaint, J. Tremblay-Mercier, M. Tuwaig, I. Vallée, V. Venogopalan, K. Wan, and S. Wang. Test-retest resting-state fmri in healthy elderly persons with a family history of alzheimer's disease. Scientific Data, 2015. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84958022180&partnerID=MN8TOARS.
X.-N. Zuo, J.S. Anderson, P. Bellec, R.M. Birn, B.B. Biswal, J. Blautzik, J.C.S. Breitner, R.L. Buckner, V.D. Calhoun, F.X. Castellanos, A. Chen, B. Chen, J. Chen, X. Chen, S.J. Colcombe, W. Courtney, R.C. Craddock, A. Di Martino, H.-M. Dong, X. Fu, Q. Gong, K.J. Gorgolewski, Y. Han, Y. He, Y. He, E. Ho, A. Holmes, X.-H. Hou, J. Huckins, T. Jiang, Y. Jiang, W. Kelley, C. Kelly, M. King, S.M. LaConte, J.E. Lainhart, X. Lei, H.-J. Li, K. Li, K. Li, Q. Lin, D. Liu, J. Liu, X. Liu, Y. Liu, G. Lu, J. Lu, B. Luna, J. Luo, D. Lurie, Y. Mao, D.S. Margulies, A.R. Mayer, T. Meindl, M.E. Meyerand, W. Nan, J.A. Nielsen, D. O'Connor, D. Paulsen, V. Prabhakaran, Z. Qi, J. Qiu, C. Shao, Z. Shehzad, W. Tang, A. Villringer, H. Wang, K. Wang, D. Wei, G.-X. Wei, X.-C. Weng, X. Wu, T. Xu, N. Yang, Z. Yang, Y.-F. Zang, L. Zhang, Q. Zhang, Z. Zhang, Z. Zhang, K. Zhao, Z. Zhen, Y. Zhou, X.-T. Zhu, and M.P. Milham. An open science resource for establishing reliability and reproducibility in functional connectomics. Scientific Data, 2014. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84928119439&partnerID=MN8TOARS.
C.L. Dansereau, P. Bellec, k. Lee, F. Pittau, J. Gotman, and C. Grova. Detection of abnormal resting-state networks in individual patients suffering from focal epilepsy: an initial step toward individual connectivity assessment. Frontiers in Neuroscience, 2014. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84920553854&partnerID=MN8TOARS.
F. Chouinard-Decorte, D.R. McKay, A. Reid, B. Khundrakpam, L. Zhao, S. Karama, P. Rioux, E. Sprooten, E. Knowles, J.W. Kent Jr., J.E. Curran, H.H.H. Göring, T.D. Dyer, R.L. Olvera, P. Kochunov, R. Duggirala, P.T. Fox, L. Almasy, J. Blangero, P. Bellec, A.C. Evans, and D.C. Glahn. Heritable changes in regional cortical thickness with age. Brain Imaging and Behavior, 2014. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84899836578&partnerID=MN8TOARS.
K. Debas, J. Carrier, M. Barakat, G. Marrelec, P. Bellec, A.H. Tahar, A. Karni, L.G. Ungerleider, H. Benali, and J. Doyon. Off-line consolidation of motor sequence learning results in greater integration within a cortico-striatal functional network. NeuroImage, 2014. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84903548115&partnerID=MN8TOARS.
F. Carbonell, P. Bellec, and A. Shmuel. Quantification of the impact of a confounding variable on functional connectivity confirms anti-correlated networks in the resting-state. NeuroImage, 2014. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84891625443&partnerID=MN8TOARS.
L. Wu, R.B. Soder, D. Schoemaker, F. Carbonnell, V. Sziklas, J. Rowley, S. Mohades, V. Fonov, P. Bellec, A. Dagher, A. Shmuel, J. Jia, S. Gauthier, and P. Rosa-Neto. Resting state executive control network adaptations in amnestic mild cognitive impairment. Journal of Alzheimer's Disease, 2014. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84901756471&partnerID=MN8TOARS.
C.J. Gauthier, C. Madjar, L. Desjardins-Crépeau, P. Bellec, L. Bherer, and R.D. Hoge. Age dependence of hemodynamic response characteristics in human functional magnetic resonance imaging. Neurobiology of Aging, 2013. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84873426002&partnerID=MN8TOARS.
J.D. Lewis, R.J. Theilmann, V. Fonov, P. Bellec, A. Lincoln, A.C. Evans, and J. Townsend. Callosal fiber length and interhemispheric connectivity in adults with autism: brain overgrowth and underconnectivity. Human Brain Mapping, 2013. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84879223322&partnerID=MN8TOARS.
K. Martínez, A.B. Solana, M. Burgaleta, J.A. Hernández-Tamames, J. Álvarez-Linera, F.J. Román, E. Alfayate, J. Privado, S. Escorial, M.A. Quiroga, S. Karama, P. Bellec, and R. Colom. Changes in resting-state functionally connected parietofrontal networks after videogame practice. Human Brain Mapping, 2013. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84885745591&partnerID=MN8TOARS.
E. Guevara, R. Berti, N. Londono, N. Xie, P. Bellec, R. Lesage, and G.A. Lodygensky. Imaging of an inflammatory injury in the newborn rat brain with photoacoustic tomography. PLoS ONE, 2013. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84891328610&partnerID=MN8TOARS.
M. Barakat, J. Carrier, K. Debas, O. Lungu, S. Fogel, G. Vandewalle, R.D. Hoge, P. Bellec, A. Karni, L.G. Ungerleider, H. Benali, and J. Doyon. Sleep spindles predict neural and behavioral changes in motor sequence consolidation. Human Brain Mapping, 2013. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84884283363&partnerID=MN8TOARS.
C. Kelly, R. Toro, A. Di Martino, C.L. Cox, P. Bellec, F.X. Castellanos, and M.P. Milham. A convergent functional architecture of the insula emerges across imaging modalities. NeuroImage, 2012. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84861337606&partnerID=MN8TOARS.
J. Song, A.S. Desphande, T.B. Meier, D.L. Tudorascu, S. Vergun, V.A. Nair, B.B. Biswal, M.E. Meyerand, R.M. Birn, P. Bellec, and V. Prabhakaran. Age-related differences in test-retest reliability in resting-state brain functional connectivity. PLoS ONE, 2012. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84870856852&partnerID=MN8TOARS.
A. Messé, G. Marrelec, P. Bellec, V. Perlbarg, J. Doyon, M. Pélégrini-Issac, and H. Benali. Comparing structural and functional graph theory features in the human brain using multimodal mri. IRBM, 2012. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84867404632&partnerID=MN8TOARS.
S. Lavoie-Courchesne, P. Rioux, F. Chouinard-Decorte, T. Sherif, M.-E. Rousseau, S. Das, R. Adalat, J. Doyon, C. Craddock, D. Margulies, C. Chu, O. Lyttelton, A.C. Evans, and P. Bellec. Integration of a neuroimaging processing pipeline into a pan-canadian computing grid. Journal of Physics: Conference Series, 2012. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84863393812&partnerID=MN8TOARS.
P.-J. Toussaint, V. Perlbarg, P. Bellec, S. Desarnaud, L. Lacomblez, J. Doyon, M.-O. Habert, and H. Benali. Resting state fdg-pet functional connectivity as an early biomarker of alzheimer's disease using conjoint univariate and independent component analyses. NeuroImage, 2012. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84866173660&partnerID=MN8TOARS.
C. Madjar, C.J. Gauthier, P. Bellec, R.M. Birn, J.C.W. Brooks, and R.D. Hoge. Task-related bold responses and resting-state functional connectivity during physiological clamping of end-tidal co 2. NeuroImage, 2012. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84859049076&partnerID=MN8TOARS.
P. Bellec, S. Lavoie-Courchesne, P. Dickinson, J.P. Lerch, A.P. Zijdenbos, and A.C. Evans. The pipeline system for octave and matlab (psom): a lightweight scripting framework and execution engine for scientific workflows. Frontiers in Neuroinformatics, 2012. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84858060836&partnerID=MN8TOARS.
F. Moeller, M. Maneshi, F. Pittau, T. Gholipour, P. Bellec, F. Dubeau, C. Grova, and J. Gotman. Functional connectivity in patients with idiopathic generalized epilepsy. Epilepsia, 2011. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-79952575824&partnerID=MN8TOARS.
P. Orban, P. Peigneux, O. Lungu, K. Debas, M. Barakat, P. Bellec, H. Benali, P. Maquet, and J. Doyon. Functional neuroanatomy associated with the expression of distinct movement kinematics in motor sequence learning. Neuroscience, 2011. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-79952631262&partnerID=MN8TOARS.
H. Ganjavi, J.D. Lewis, P. Bellec, P.A. MacDonald, D.P. Waber, A.C. Evans, and S. Karama. Negative associations between corpus callosum midsagittal area and iq in a representative sample of healthy children and adolescents. PLoS ONE, 2011. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-79956267697&partnerID=MN8TOARS.
K. Debas, J. Carrier, P. Orban, M. Barakat, O. Lungu, G. Vandewalle, A.H. Tahar, P. Bellec, A. Karni, L.G. Ungerleider, H. Benali, and J. Doyon. Brain plasticity related to the consolidation of motor sequence learning and motor adaptation. Proceedings of the National Academy of Sciences of the United States of America, 2010. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-78049272883&partnerID=MN8TOARS.
P. Bellec, P. Rosa-Neto, O.C. Lyttelton, H. Benali, and A.C. Evans. Multi-level bootstrap analysis of stable clusters in resting-state fmri. NeuroImage, 2010. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-77952482885&partnerID=MN8TOARS.
Proceedings#
E. Guevara, R. Berti, I. Londono, N. Xie, P. Bellec, F. Lesage, and G.A. Lodygensky. Photoacoustic imaging of an inflammatory lesion model in the neonatal rat brain. In Proceedings of SPIE - The International Society for Optical Engineering. 2014. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84923013256&partnerID=MN8TOARS.
P. Bellec. Mining the hierarchy of resting-state brain networks: selection of representative clusters in a multiscale structure. In Proceedings - 2013 3rd International Workshop on Pattern Recognition in Neuroimaging, PRNI 2013. 2013. URL: http://www.scopus.com/inward/record.url?eid=2-s2.0-84885196494&partnerID=MN8TOARS.
Preprints#
Sana Ahmadi, Francois Paugam, Tristan Glatard, and Pierre Lune Bellec. Training compute-optimal vision transformers for brain encoding. Unknown preprint, 2024. URL: https://arxiv.org/abs/2410.19810.
Anirudha Kemtur, Francois Paugam, Basile Pinsard, Yann Harel, Pravish Sainath, Maximilien Le Clei, Julie Boyle, Karim Jerbi, and Pierre Bellec. Behavioral imitation with artificial neural networks leads to personalized models of brain dynamics during videogame play. bioRxiv preprint, 2024. URL: http://dx.doi.org/10.1101/2023.10.28.564546.
Maëlle Freteault, Maximilien Le Clei, loic tetrel, Pierre Bellec, and Nicolas FARRUGIA. Alignment of auditory artificial networks with massive individual fmri brain data leads to generalizable improvements in brain encoding and downstream tasks. bioRxiv preprint, 2024. URL: http://dx.doi.org/10.1101/2023.09.06.556533.
Sana Ahmadi, Pierre Bellec, and Tristan Glatard. Scaling up ridge regression for brain encoding in a massive individual fmri dataset. Unknown preprint, 2024. URL: https://arxiv.org/abs/2403.19421.
Yann Harel, Basile Pinsard, Julie A. Boyle, André Cyr, Maximilien Le Clei, Paul-Henri Mignot, Marie St-Laurent, Karim Jerbi, and Pierre Bellec. Gamer in the scanner : event-related analysis of fmri activity during retro videogame play guided by automated annotations of game content. OSF preprint, 2023. URL: https://doi.org/10.31234/osf.io/uakq9.
Mathieu Boudreau, Agah Karakuzu, Arnaud Boré, Basile Pinsard, Kiril Zelenkovski, Eva Alonso-Ortiz, Julie Boyle, Pierre Bellec, and Julien Cohen-Adad. Longitudinal stability of brain and spinal cord quantitative mri measures. Neurolibre preprint, 2023. URL: https://doi.org/10.55458/neurolibre.00018.
Pierre Bellec, Saâd Jbabdi, and R. Cameron Craddock. Parcellating the parcellation issue - a proof of concept for reproducible analyses using neurolibre. Neurolibre preprint, 2023. URL: https://doi.org/10.55458/neurolibre.00010.
Yohan Chatelain, Loïc Tetrel, Christopher J. Markiewicz, Mathias Goncalves, Gregory Kiar, Oscar Esteban, Pierre Bellec, and Tristan Glatard. A numerical variability approach to results stability tests and its application to neuroimaging. Unknown preprint, 2023. URL: https://arxiv.org/abs/2307.01373.
Hao-Ting Wang, Steven L Meisler, Hanad Sharmarke, Natasha Clarke, François Paugam, Nicolas Gensollen, Christopher J Markiewicz, Bertrand Thirion, and Pierre Bellec. A reproducible benchmark of resting-state fmri denoising strategies using fmriprep and nilearn. Neurolibre preprint, 2023. URL: https://doi.org/10.55458/neurolibre.00012.
Hao-Ting Wang, Steven L Meisler, Hanad Sharmarke, Natasha Clarke, Nicolas Gensollen, Christopher J Markiewicz, François Paugam, Bertrand Thirion, and Pierre Bellec. Continuous evaluation of denoising strategies in resting-state fmri connectivity using fmriprep and nilearn. bioRxiv preprint, 2023. URL: https://doi.org/10.1101/2023.04.18.537240.
Maximilien Le Clei and Pierre Bellec. Neuroevolution of recurrent architectures on control tasks. Unknown preprint, 2023. URL: https://arxiv.org/abs/2304.12431.
Eddy Fortier, Pierre Bellec, Julie A. Boyle, and Adrian Fuente. Mri noise and auditory health: can one hundred scans be linked to hearing loss? the case of the courtois neuromod project. OSF preprint, 2023. URL: https://doi.org/10.31234/osf.io/7xkng.
François Paugam, Basile Pinsard, Guillaume Lajoie, and Pierre Bellec. A benchmark of individual auto-regressive models in a massive fmri dataset. OSF preprint, 2023. URL: https://doi.org/10.31234/osf.io/pvx3d.
Shima Rastegarnia, Marie St-Laurent, Elizabeth DuPre, Basile Pinsard, and Pierre Bellec. Brain decoding of the human connectome project tasks in a dense individual fmri dataset. OSF preprint, 2022. URL: https://doi.org/10.31234/osf.io/9t5nh.
Yann Harel, André Cyr, Julie A. Boyle, Basile Pinsard, Jeremy Bernard, Karim Jerbi, Pierre Bellec, Marie-France Fourcade, Himanshu Aggarwal, Ana Fernanda Ponce, and Bertrand Thirion. Open design and validation of a reproducible videogame controller for mri and meg. OSF preprint, 2022. URL: https://doi.org/10.31234/osf.io/m2x6y.
Agah Karakuzu, Elizabeth DuPre, Loic Tetrel, Patrick Bermudez, Mathieu Boudreau, Mary Chin, Jean-Baptiste Poline, Samir Das, Pierre Bellec, and Nikola Stikov. Neurolibre : a preprint server for full-fledged reproducible neuroscience. Unknown preprint, 2022. URL: https://doi.org/10.31219/osf.io/h89js.
Rachel J Harding, Patrick Bermudez, Michael J. S. Beauvais, Pierre Bellec, Sean Hill, Bartha Maria Knoppers, Paul Pavlidis, Jean-Baptiste Poline, Jane Roskams, Nikola Stikov, Jessica Stone, Stephen Strother, CONP Consortium, and Alan C. Evans. The canadian open neuroscience platform – an open science framework for the neuroscience community. Unknown preprint, 2022. URL: https://doi.org/10.31219/osf.io/eh349.
Yu Zhang, Nicolas Farrugia, and Pierre Bellec. Deep learning models of cognitive processes constrained by human brain connectomes. bioRxiv preprint, 2021. URL: https://doi.org/10.1101/2021.10.12.464145.
Yu Zhang and Pierre Bellec. Transferability of brain decoding using graph convolutional networks. bioRxiv preprint, 2020. URL: https://doi.org/10.1101/2020.06.21.163964.
Franziskus Liem, Kamalaker Dadi, Denis A. Engemann, Alexandre Gramfort, Pierre Bellec, R. Cameron Craddock, Jessica S. Damoiseaux, Christopher J. Steele, Tal Yarkoni, Daniel S. Margulies, and Gaël Varoquaux. Predicting future cognitive decline from non-brain and multimodal brain imaging data in healthy and pathological aging. bioRxiv preprint, 2020. URL: https://doi.org/10.1101/2020.06.10.142174.
Sebastian GW. Urchs, Hien Duy Nguyen, Clara Moreau, Christian Dansereau, Angela Tam, Alan C. Evans, and Pierre Bellec. Reproducible functional connectivity endophenotype confers high risk of asd diagnosis in a subset of individuals. bioRxiv preprint, 2020. URL: https://doi.org/10.1101/2020.06.01.127688.
Yu Zhang, Loïc Tetrel, Bertrand Thirion, and Pierre Bellec. Functional annotation of human cognitive states using deep graph convolution. bioRxiv preprint, 2020. URL: https://doi.org/10.1101/2020.04.24.060657.
Amal Boukhdhir, Yu Zhang, Max Mignotte, and Pierre Bellec. Unraveling reproducible dynamic states of individual brain functional parcellation. bioRxiv preprint, 2020. URL: https://doi.org/10.1101/2020.03.02.972760.
Pierre Bellec and Julie A. Boyle. Bridging the gap between perception and action: the case for neuroimaging, ai and video games. OSF preprint, 2019. URL: http://dx.doi.org/10.31234/osf.io/3epws.
Christian Dansereau, Angela Tam, AmanPreet Badhwar, Sebastian Urchs, Pierre Orban, Pedro Rosa-Neto, and Pierre Bellec. A brain signature highly predictive of future progression to alzheimer's dementia. Unknown preprint, 2018. URL: https://arxiv.org/abs/1712.08058.
Pierre Orban, Angela Tam, Sebastian Urchs, Melissa Savard, Cécile Madjar, AmanPreet Badhwar, Christian Dansereau, Jacob Vogel, Amir Schmuel, Alain Dagher, Sylvia Villeneuve, Judes Poirier, Pedro Rosa-Neto, John Breitner, Pierre Bellec, for the Alzheimer’s Disease Neuroimaging Initiative, and and the Pre-symptomatic Evaluation of Novel or Experimental Treatments for Alzheimer’s Disease Program. Subtypes of functional brain connectivity as early markers of neurodegeneration in alzheimer’s disease. bioRxiv preprint, 2017. URL: http://dx.doi.org/10.1101/195164.
Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M. Mallar Chakravarty, Nathan W. Churchill, Alexander Li Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S. Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J. Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Tal Yarkoni, Yida Wang, and Russell A. Poldrack. Bids apps: improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. bioRxiv preprint, 2016. URL: https://doi.org/10.1101/079145.
Maxime Pelland, Pierre Orban, Christian Dansereau, Franco Lepore, Pierre Bellec, and Olivier Collignon. State-dependent modulation of functional connectivity in early blind individuals. bioRxiv preprint, 2016. URL: https://doi.org/10.1101/075465.
Misc#
Maximilien Le Clei and Pierre Bellec. Neuroevolution of recurrent architectures on control tasks. 2022. URL: http://dx.doi.org/10.1145/3520304.3529052.
Yassine Benhajali, AmanPreet Badhwar, Sebastian Urchs, Clara Moreau, Francois Chouinard-Decorte, Uku Vainik, Perrine Ferré, Pierre Orban, Daniel Pérusse, and Pierre Bellec. Subtypes of brain activation are heritable and genetically linked with behavior in the human connectome project sample. 2020. URL: https://doi.org/10.31234/osf.io/excdq.
Yassine Benhajali, AmanPreet Badhwar, Helen Spiers, Sebastian Urchs, Jonathan Armoza, Thomas Ong, Daniel Pérusse, and Pierre Bellec. A standardized protocol for efficient and reliable quality control of brain registration in functional mri studies. 2019. URL: https://doi.org/10.31234/osf.io/m9us6.
Aki Nikolaidis, Anibal Solon Heinsfeld, Ting Xu, Pierre Bellec, Joshua Vogelstein, and Michael Milham. Bagging improves reproducibility of functional parcellation of the human brain. 2018. URL: https://doi.org/10.1101/343392.